Papers relevant to the Chromatin Dynamics and Development topic

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K. Fal, D. Tomkova, G. Vachon, M-E. Chabouté, A. Berr and C. Carles* (2021). Chromatin manipulation and editing in plants: Challenges, approaches and new technologies. International Journal of Molecular Sciences, 22(2):512.

 

C. Thouly, M. Le Masson, X. Lai, C.C. Carles, G. Vachon* (2020). Unwinding BRAHMA Functions in Plants. Genes, 11(1):90.

 

Lai X, Stigliani A, Vachon G, Carles C, Smaczniak C, Zubieta C, Kaufmann K, Parcy F. (2019). Building Transcription Factor Binding Site Models to Understand Gene Regulation in Plants. Molecular Plant, 12(6):743-763.

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Yan W , Chen D*, Schumacher J, Durantini D, Engelhorn J, Chen M, Carles Cù, Kaufmann K. (2019). Dynamic control of enhancer activity drives stage-specific gene expression during flower morphogenesis. Nature Communications, 10(1):1705.

 

W. Yan, D. Chen, C. Smaczniak, J. Engelhorn, H. Liu, W. Yang, A. Graf, C.C. Carlesù, D.X. Zhou, K. Kaufmann (2018). Dynamic and spatial restriction of Polycomb activity by plant histone demethylases. Nature Plants. 4(9):681-689.

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V. Hugouvieux, C.S. Silva, A. Jourdain, A. Stigliani, Q. Charras, V. Conn, S.J. Conn, C.C. Carles, F. Parcy, C. Zubieta (2018). Tetramerization of MADS family transcription factors SEPALLATA3 and AGAMOUS is required for floral meristem determinacy in Arabidopsis. Nucleic Acids Res. doi: 10.1093/nar/gky205. [Epub ahead of print]

 

G. Vachon, J. Engelhorn, C.C. Carles* (2018).  Interactions between transcription factors and chromatin regulators in the control of flower development. Flowering Newsletter Review, Journal of Experimental Botany, in press.

 

J. Engelhorn, F. Wellmer, C.C. Carles* (2017).  Profiling histone modifications in synchronised floral tissues for quantitative resolution of chromatin and transcriptome dynamics. Methods Mol Biol., 1675: 271-296.

 

J. Engelhorn, R. Blanvillain, C. Kröner, H. Parrinello, M. Rohmer, D. Pose, F. Ott, M. Schmid, C.C. Carles*. Dynamics of H3K4me3 chromatin marks prevails over H3K27me3 for gene regulation during flower morphogenesis in Arabidopsis thaliana. Epigenomes, 2017, 1(2), 8.

doi:10.3390/epigenomes1020008.

 

Moreau F, Thevenon E, Blanvillain R, Lopez-Vidriero I, Franco-Zorrilla JM, Dumas R, Parcy F, Morel P, Trehin C and Carles CC*

The Myb-domain protein ULTRAPETALA1 INTERACTING FACTOR 1 controls floral meristem activities in Arabidopsis.

Development, 2016, 143(7): 1108-1119

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Mandel T, Candela H, Landau U, Asis L, Zelinger E, Carles CC and Williams LE

Differential regulation of meristem size, morphology and organization by the ERECTA, CLAVATA and class III HD-ZIP pathways.

Development, 2016, 143(9): 1612-1622

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Ó'Maoiléidigh DS, Thomson B, Raganelli A, Wuest SE, Ryan PT, Kwàsniewska K, Carles CC, Graciet E and Wellmer F

Gene network analysis of Arabidopsis thaliana flower development through dynamic gene perturbations.

Plant Journal, 2015, 83(2): 344-358 

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Engelhorn J, Moreau F, Fletcher JC and Carles CC*

ULTRAPETALA1 and LEAFY pathways function independently in specifying identity and determinacy at the Arabidopsis floral meristem.

Annals of Botany, 2014, 114(7): 1497-1505

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Mandel T, Moreau F, Kutsher Y, Fletcher JC, Carles CC and Williams LE

The ERECTA receptor kinase regulates Arabidopsis shoot apical meristem size, phyllotaxy and floral meristem identity.

Development, 2014, 141(4): 830-841

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Monfared MM, Carles CC, Rossignol P, Pires HR and Fletcher JC

The ULT1 and ULT2 trxG genes play overlapping roles in Arabidopsis development and gene regulation.

Molecular Plant, 2013, 6(5): 1564-1579

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Smaczniak C, Immink RG, Muiño JM, Blanvillain R, Busscher M, Busscher-Lange J, Dinh QD, Liu S, Westphal AH, Boeren S, Parcy F, Xu L, Carles CC, Angenent GC and Kaufmann K

Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development.

Proceedings of the National Academy of Sciences, 2012, 109(5): 1560-1565

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Carles CC and Fletcher JC

The SAND domain protein ULTRAPETALA1 acts as a trithorax group factor to regulate cell fate in plants.

Genes & Development, 2009, 23: 2723-2728

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Carles CC, Choffnes-Inada D, Reville K, Lertpiriyapong K and Fletcher JC

ULTRAPETALA1 encodes a SAND domain putative transcriptional regulator that controls shoot and floral meristem activity in Arabidopsis.

Development, 2005, 132(5): 897-911

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Carles CC, Lertpiriyapong K, Reville K and Fletcher JC

The ULTRAPETALA1 gene functions early in Arabidopsis development to restrict shoot apical meristem activity, and acts through WUSCHEL to regulate floral meristem determinacy.

Genetics, 2004, 167(4): 1893-903

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Reviews and Book Chapters

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Engelhorn J, Wellmer F, Carles CC* (2017). Profiling histone modifications in synchronised floral tissues for quantitative

resolution of chromatin and transcriptome dynamics. Methods Mol Biol. In press

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Engelhorn J, Blanvillain R and Carles CC

Gene activation and cell fate control in plants: A chromatin perspective.

Cellular and Molecular Life Sciences, 2014, 71(16): 3119-3137

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Chahtane H, Denay G, Engelhorn J, Monniaux M, Moyroud E, Moreau F, Carles C, Tichtincky G, Zubieta C and Parcy F

Floral development: An integrated view. In From Molecules to Living Organisms: An Interplay Between Biology and Physics: Lecture Notes of the Les Houches School of Physics: Volume 102, July 2014 (Lecture Notes of the Les Houches Summer School), Session CII, (E. Pebay-Peyroula, H. Nury, F. Parcy, R.W.H. Ruigrok, C. Ziegler and L.F. Cugliandolo, Eds) Oxford University Press, 2016, pp 464

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Carles CC and Fletcher JC

Missing links between histones and RNA Pol II arising from SAND?

Epigenetics, 2010, 5(5): 381-385

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Carles CC, Ha CM, Jun JH, Fiume E and Fletcher JC

Analyzing shoot apical meristem development.

Methods in Molecular Biology, 2010, 655: 105-129

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Carles CC and Fletcher JC

Shoot apical meristem maintenance: The art of a dynamic balance.

Trends in Plant Science, 2003, 8(8): 394-401

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Sharma VK, Carles C and Fletcher JC

Maintenance of stem cell populations in plants.

Proceedings of the National Academy of Sciences USA, 2003, 100(Suppl 1): 11823-11829

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Other topics

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Rodor J, Jobet E, Bizarro J, Vignols F, Carles C, Suzuki T, Nakamura K and Echeverria M

AtNUFIP, an essential protein for plant development, reveals the impact of snoRNA gene organisation on the assembly of snoRNPs and rRNA methylation in Arabidopsis thaliana.

Plant Journal, 2011, 65(5): 807-819

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Williams L*, Carles CC*, Osmont KS* and Fletcher JC

A database analysis method identifies an endogenous trans -acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes. Proceedings of the National Academy of Sciences USA, 2005, 102(27): 9703-9708

*LW, CCC, and KSO contributed equally to this work.